Question #88796

1 Answer
Nov 15, 2017

Hydrophobic Amino Acid residues...

Explanation:

Proteins are made by concatenating Amino Acids.
All proteins in this world are made up of only 20: the proteinogenic AA's.

These all have an identical backbone (#NH_2-CHR-COOH#), only the R-group differs:

enter image source here
(Source: https://en.wikipedia.org/wiki/Amino_acid)

These side-chains (residues) can be hydrophilic (polar, or "water-loving") or hydrophobic (apolar, or "water-shunning").

A protein essentially is like a string of pearls, but not in a linear fashion: the identity of the residues (the R-chains) determines how the chain is formed 3D-wise.

There are three main structures: #alpha#-helix, #beta#-pleated sheet , and (#gamma#) -random coil.

Depending on its function an enzyme will contain a combination of these structures: (green = enzyme)
enter image source here

If a region is Hydrophobic, it won't be happy and seek refuge in an apolar environment, like the lipid bilayer of cell membranes.:

enter image source here
image source: https://en.wikipedia.org/wiki/Membrane_protein

In the image above, the space between the pink and the light-blue horizontal lines represents the lipid bylayer, and you can see that various #alpha#-helices have taken refuge there...

This anchors the protein (in this case a Potassium Channel) firmly in the bilayer, as the hydrophobic helices will actively resist being pulled into the polar region outside...